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Table 1 Known forest tree protein structures

From: Structural and functional characterization of tree proteins involved in redox regulation: a new frontier in forest science

PDB code

Family

Source

Enzyme/protein

1B6F

Betulaceae

Betula pendula (birch)

BET V 1 allergen

1BTV

Betulaceae

Betula pendula (birch)

BET V 1 allergen

1BV1

Betulaceae

Betula pendula (birch)

BET V 1 allergen

1FM4

Betulaceae

Betula pendula (birch)

BET V 1 allergen

1LLT

Betulaceae

Betula pendula (birch)

BET V 1 allergen

1QMR

Betulaceae

Betula pendula (birch)

BET V 1 allergen

4A80

Betulaceae

Betula pendula (birch)

BET V 1 allergen

4A81

Betulaceae

Betula pendula (birch)

BET V 1 allergen

4A83

Betulaceae

Betula pendula (birch)

BET V 1 allergen

4A84

Betulaceae

Betula pendula (birch)

BET V 1 allergen

4A85

Betulaceae

Betula pendula (birch)

BET V 1 allergen

4A86

Betulaceae

Betula pendula (birch)

BET V 1 allergen

4A87

Betulaceae

Betula pendula (birch)

BET V 1 allergen

4A88

Betulaceae

Betula pendula (birch)

BET V 1 allergen

4A8G

Betulaceae

Betula pendula (birch)

BET V 1 allergen

4A8U

Betulaceae

Betula pendula (birch)

BET V 1 allergen

4A8V

Betulaceae

Betula pendula (birch)

BET V 1 allergen

4B9R

Betulaceae

Betula pendula (birch)

BET V 1 allergen

4BK6

Betulaceae

Betula pendula (birch)

BET V 1 allergen

4BK7

Betulaceae

Betula pendula (birch)

BET V 1 allergen

4BKC

Betulaceae

Betula pendula (birch)

BET V 1 allergen

4BKD

Betulaceae

Betula pendula (birch)

BET V 1 allergen

4BTZ

Betulaceae

Betula pendula (birch)

BET V 1 allergen

1H4B

Betulaceae

Betula pendula (birch)

BET V 4 allergen

1CQA

Betulaceae

Betula pendula (birch)

Profilin

1R8N

Caesalpinaceae

Delonix regia

Kunitz trypsin inhibitor

3QQQ

Cannabaceae

Trema tomentosa

Plant hemoglobin

1PXZ

Cupressaceae

Cedar

Allergen

1QYD

Cupressaceae

Thuya

Pinoresinol reductase

1P9G

Eucommiaceae

Eucommia ulmoides

Antifungal peptide

1P9Z

Eucommiaceae

Eucommia ulmoides

Antifungal peptide

4MPI

Euphorbiaceae

Hevea

Chitin-binding module of a chitinase-like protein

4HPG

Euphorbiaceae

Hevea

Glycosylated glucanase

4IIS

Euphorbiaceae

Hevea

Glycosylated glucanase

1HVQ

Euphorbiaceae

Hevea

Hevamin A

1LLO

Euphorbiaceae

Hevea

Hevamin A

2HVM

Euphorbiaceae

Hevea

Hevamin A

1KQY

Euphorbiaceae

Hevea

Hevamin mutant

1KQZ

Euphorbiaceae

Hevea

Hevamin mutant

1KR0

Euphorbiaceae

Hevea

Hevamin mutant

1KR1

Euphorbiaceae

Hevea

Hevamin mutant

1HEV

Euphorbiaceae

Hevea

Hevein

1QB9

Euphorbiaceae

Hevea

Hevein

1T0W

Euphorbiaceae

Hevea

Hevein

1WKX

Euphorbiaceae

Hevea

Hevein

4YAS

Euphorbiaceae

Hevea

Hydroxy nitryle lyase

5YAS

Euphorbiaceae

Hevea

Hydroxy nitryle lyase

6YAS

Euphorbiaceae

Hevea

Hydroxy nitryle lyase

7YAS

Euphorbiaceae

Hevea

Hydroxy nitryle lyase

1QJ4

Euphorbiaceae

Hevea

Hydroxynitryle lyase

1SC9

Euphorbiaceae

Hevea

Hydroxynitryle lyase

1SCI

Euphorbiaceae

Hevea

Hydroxynitryle lyase

1SCK

Euphorbiaceae

Hevea

Hydroxynitryle lyase

1SCQ

Euphorbiaceae

Hevea

Hydroxynitryle lyase

1YAS

Euphorbiaceae

Hevea

Hydroxynitryle lyase

1YB6

Euphorbiaceae

Hevea

Hydroxynitryle lyase

1YB7

Euphorbiaceae

Hevea

Hydroxynitryle lyase

2G4L

Euphorbiaceae

Hevea

Hydroxynitryle lyase

2YAS

Euphorbiaceae

Hevea

Hydroxynitryle lyase

3C6X

Euphorbiaceae

Hevea

Hydroxynitryle lyase

3C6Y

Euphorbiaceae

Hevea

Hydroxynitryle lyase

3C6Z

Euphorbiaceae

Hevea

Hydroxynitryle lyase

3C70

Euphorbiaceae

Hevea

Hydroxynitryle lyase

3YAS

Euphorbiaceae

Hevea

Hydroxynitryle lyase

1G5U

Euphorbiaceae

Hevea

Latex profilin

1FNY

Fabaceae

Robinia

Lectin

1FNZ

Fabaceae

Robinia

Lectin

2VLC

Laraceae

Cinnamomum camphora (camphor)

Cinnamomin (ribosome inactivating protein)

2LVF

Lecythidoideae

Bertholletia excelsa (Brazil nut)

Allergen

1J4S

Moraceae

Artocarpus

Artocarpin

1J4T

Moraceae

Artocarpus

Artocarpin

1J4U

Moraceae

Artocarpus

Artocarpin

1VBO

Moraceae

Artocarpus

Artocarpin

1VBP

Moraceae

Artocarpus

Artocarpin

1JAC

Moraceae

Artocarpus

Jacalin

1WS4

Moraceae

Artocarpus

Jacalin

1WS5

Moraceae

Artocarpus

Jacalin

3P8S

Moraceae

Artocarpus

Jacalin

1KU8

Moraceae

Artocarpus

Jacalin (lectin)

1KUJ

Moraceae

Artocarpus

Jacalin (lectin)

1M26

Moraceae

Artocarpus

Jacalin (lectin)

1PXD

Moraceae

Artocarpus

Jacalin (lectin)

1UGW

Moraceae

Artocarpus

Jacalin (lectin)

1UGX

Moraceae

Artocarpus

Jacalin (lectin)

1UGY

Moraceae

Artocarpus

Jacalin (lectin)

1UH0

Moraceae

Artocarpus

Jacalin (lectin)

1UH1

Moraceae

Artocarpus

Jacalin (lectin)

1TOQ

Moraceae

Artocarpus

Lectin

1TP8

Moraceae

Artocarpus

Lectin

4AK4

Moraceae

Artocarpus

Lectin

4AKB

Moraceae

Artocarpus

Lectin

4AKC

Moraceae

Artocarpus

Lectin

4AKD

Moraceae

Artocarpus

Lectin

4CUO

Moraceae

Ficus bengalensis

Banyan peroxidase

1JOT

Moraceae

Maclura pomifera

Agglutinin

3LLY

Moraceae

Maclura pomifera

Agglutinin

3LLZ

Moraceae

Maclura pomifera

Agglutinin

3LM1

Moraceae

Maclura pomifera

Agglutinin

3S9V

Pinaceae

Abies

Abietadiene synthase

3SAE

Pinaceae

Abies

Sesquiterpene synthase

3SDQ

Pinaceae

Abies

Sesquiterpene synthase

3SDR

Pinaceae

Abies

Sesquiterpene synthase

3SDT

Pinaceae

Abies

Sesquiterpene synthase

3SDU

Pinaceae

Abies

Sesquiterpene synthase

3SDV

Pinaceae

Abies

Sesquiterpene synthase

3HBD

Pinaceae

Picea

Chitinase

3HBE

Pinaceae

Picea

Chitinase

3HBH

Pinaceae

Picea

Chitinase

1QYC

Pinaceae

Pinus

Phenylcoumaran benzylic ether reductase

1UOU

Pinaceae

Pinus

Stilbene synthase

1XES

Pinaceae

Pinus

Stilbene synthase

1XET

Pinaceae

Pinus

Stilbene synthase

4LEJ

Pinaceae

Pinus

Vicilin

4N6T

Salicaceae

Populus (poplar)

Adhiron (de novo prot)

4N6U

Salicaceae

Populus (poplar)

Adhiron (de novo prot)

3A9U

Salicaceae

Populus (poplar)

Coumarate CoA ligase

3A9V

Salicaceae

Populus (poplar)

Coumarate CoA ligase

3NI2

Salicaceae

Populus (poplar)

Coumarate CoA ligase

1Z7P

Salicaceae

Populus (poplar)

Glutaredoxin C1a

1Z7R

Salicaceae

Populus (poplar)

Glutaredoxin C1a

2E7P

Salicaceae

Populus (poplar)

Glutaredoxin C1a

No deposit

Salicaceae

Populus (poplar)

Glutaredoxin C4 NMR crystallographya

3FZ9

Salicaceae

Populus (poplar)

Glutaredoxin S12a

3FZA

Salicaceae

Populus (poplar)

Glutaredoxin S12a

2LKU

Salicaceae

Populus (poplar)

Glutaredoxin S14 apo NMRa

2LKU

Salicaceae

Populus (poplar)

Glutaredoxin S14 NMRa

2P5Q

Salicaceae

Populus (poplar)

Glutathione peroxidase Gpx5a

2P5R

Salicaceae

Populus (poplar)

Glutathione peroxidase Gpx5a

4PQH

Salicaceae

Populus (poplar)

Glutathione S transferase L1a

4PQI

Salicaceae

Populus (poplar)

Glutathione S transferase L3a

3N0F

Salicaceae

Populus (poplar)

Isoprene synthase

3N0G

Salicaceae

Populus (poplar)

Isoprene synthase

2 J89

Salicaceae

Populus (poplar)

Methionine sulfoxide reductase Aa

1JXG

Salicaceae

Populus (poplar)

Plastocyanin

1PLC

Salicaceae

Populus (poplar)

Plastocyanin

1PNC

Salicaceae

Populus (poplar)

Plastocyanin

1PND

Salicaceae

Populus (poplar)

Plastocyanin

2PCY

Salicaceae

Populus (poplar)

Plastocyanin

3PCY

Salicaceae

Populus (poplar)

Plastocyanin

4DP0

Salicaceae

Populus (poplar)

Plastocyanin

4DP1

Salicaceae

Populus (poplar)

Plastocyanin

4DP2

Salicaceae

Populus (poplar)

Plastocyanin

4DP4

Salicaceae

Populus (poplar)

Plastocyanin

4DP5

Salicaceae

Populus (poplar)

Plastocyanin

4DP6

Salicaceae

Populus (poplar)

Plastocyanin

4DP7

Salicaceae

Populus (poplar)

Plastocyanin

4DP8

Salicaceae

Populus (poplar)

Plastocyanin

4DP9

Salicaceae

Populus (poplar)

Plastocyanin

4DPA

Salicaceae

Populus (poplar)

Plastocyanin

4DPB

Salicaceae

Populus (poplar)

Plastocyanin

4DPC

Salicaceae

Populus (poplar)

Plastocyanin

4PCY

Salicaceae

Populus (poplar)

Plastocyanin

5PCY

Salicaceae

Populus (poplar)

Plastocyanin

6PCY

Salicaceae

Populus (poplar)

Plastocyanin

1TKW

Salicaceae

Populus (poplar)

Plastocyanin cyt f complex

1SI9

Salicaceae

Populus (poplar)

Protein SP1 heat stable

1TRO

Salicaceae

Populus (poplar)

Protein SP1 heat stable

1YQD

Salicaceae

Populus (poplar)

Sinapyl alcohol dehydrogenase

1YQX

Salicaceae

Populus (poplar)

Sinapyl alcohol dehydrogenase

1TI3

Salicaceae

Populus (poplar)

Thioredoxin h1a

3D21

Salicaceae

Populus (poplar)

Thioredoxin h4a

3D22

Salicaceae

Populus (poplar)

Thioredoxin h4a

1TP9

Salicaceae

Populus (poplar)

Type II peroxiredoxina

1UMZ

Salicaceae

Populus (poplar)

Xyloglucan endotransglycolase

1UN1

Salicaceae

Populus (poplar)

Xyloglucan endotransglycolase

2YII

Taxaceae

Taxus

Phenylalanine amino mutase

4BAA

Taxaceae

Taxus

Phenylalanine amino mutase

4BAB

Taxaceae

Taxus

Phenylalanine amino mutase

4C5R

Taxaceae

Taxus

Phenylalanine amino mutase

4C5S

Taxaceae

Taxus

Phenylalanine amino mutase

4C5U

Taxaceae

Taxus

Phenylalanine amino mutase

4C6G

Taxaceae

Taxus

Phenylalanine amino mutase

4CQ5

Taxaceae

Taxus

Phenylalanine amino mutase

3NZ4

Taxaceae

Taxus

Taxadiene synthase

3P5P

Taxaceae

Taxus

Taxadiene synthase

3P5R

Taxaceae

Taxus

Taxadiene synthase

  1. aIndicates the structures deposited by the authors of this paper