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Fig. 2 | Annals of Forest Science

Fig. 2

From: A genomic dataset of single‐nucleotide polymorphisms generated by ddRAD tag sequencing in Q. petraea (Matt.) Liebl. populations from Central-Eastern Europe and Balkan Peninsula

Fig. 2

a Plot of the number of new polymorphic loci (r80 loci) gained for each iteration of M (the distance between stacks) and n (the maximum number of mismatches allowed between loci) of the preliminary test run of the “denovo_map.pl” pipeline in Stacks (Catchen et al. 2013; Rochette et al. 2019). The orange dot corresponds to the selected value. b Box plot of mean coverage of reads for each population (including all individuals)

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Annals of Forest Science

ISSN: 1297-966X