Table 3 Detected polymorphisms and genomic coverage of Q. petraea populations
Pop | Samples per locus | All sites | Variant sites | Polymorphic sites | No. of private alleles | Mean coverage (SD) | No. of reads (%) |
|---|---|---|---|---|---|---|---|
AL1 | 9.1795 | 1,349,961 | 10,362 | 8681 | 61 | 11.21 × (18.35) | 101,988.5 (58.92%) |
BH1 | 9.2369 | 1,458,812 | 11,546 | 9688 | 118 | 13.43 × (14.81) | 134,311.4 (59.60%) |
BH2 | 9.1301 | 1,063,481 | 8473 | 7022 | 33 | 13.84 × (18.44) | 121,266.8 (60.83%) |
BH3 | 9.1825 | 1,144,541 | 9160 | 7511 | 31 | 12.61 × (13.54) | 111,688.9 (60.78%) |
BU1 | 9.1984 | 1,464,403 | 11,246 | 9498 | 58 | 11.51 × (15.99) | 109,226.2 (60.07%) |
BU2 | 8.562 | 771,154 | 5904 | 4781 | 12 | 12.03 × (15.32) | 108,617.92 (59.72%) |
BU3 | 9.1402 | 1,252,776 | 9960 | 8054 | 49 | 12.11 × (19.25) | 110,587.2 (55.93%) |
BU4 | 9.1919 | 1,283,326 | 10,168 | 7139 | 96 | 12.76 × (17.53) | 116,093.4 (59.42%) |
HU1 | 9.2404 | 1,184,791 | 9285 | 7142 | 54 | 11.78 × (12.99) | 98,395.2 (59.46%) |
HU2 | 9.1575 | 1,138,892 | 9043 | 7589 | 53 | 11.56 × (16.01) | 98,240.1 (55.80%) |
HU3 | 9.1747 | 1,454,340 | 11,267 | 9476 | 69 | 11.85 × (12.78) | 107,480.7 (63.90%) |
KO1 | 9.2007 | 1,493,052 | 11,508 | 9749 | 62 | 11.76 × (14.99) | 113,011.8 (59.98%) |
RO1 | 9.0935 | 1,334,593 | 10,036 | 8369 | 37 | 10.82 × (17.47) | 105,582.6 (54.86%) |
RO2 | 9.1707 | 1,412,779 | 10,747 | 9029 | 42 | 11.84 × (20.97) | 110,162.2 (56.85%) |
RO3 | 9.2393 | 1,479,964 | 11,691 | 9837 | 72 | 12.26 × (16.73) | 119,783.8 (58.06%) |
SE1 | 9.2025 | 1,542,620 | 11,886 | 10,255 | 63 | 12.12 × (13.00) | 128,291.5 (59.53%) |
SE2 | 9.2263 | 1,593,744 | 12,442 | 10,481 | 102 | 12.51 × (17.42) | 123,251.7 (61.60%) |
SE3 | 9.2137 | 1,469,120 | 11,649 | 9692 | 59 | 11.91 × (16.35) | 111,958.5 (61.31%) |