Genetic, geographic, and climatic factors jointly shape leaf morphology of an alpine oak, Quercus aquifolioides Rehder & E.H. Wilson

Li, Yuejuan; Zhang, Yuanye; Liao, Pei-Chun; Wang, Tianrui; Wang, Xuanying; Ueno, Saneyoshi; Du, Fang K.

doi:10.1007/s13595-021-01077-w

Annals of Forest Science

Table 5 Information regarding the 25 nuclear simple sequence repeats (nSSR) loci primers used for genotyping

From: Genetic, geographic, and climatic factors jointly shape leaf morphology of an alpine oak, Quercus aquifolioides Rehder & E.H. Wilson

Locus	Ta (°C)	Motif	Primer sequence (5′ to 3′)	Allele range (bp)	Reference
MSQ13	56	TC	TGGCTGCACCTATGGCTCTTAG	188–226	Dow et al. 1995
MSQ13	56	TC	ACACTCAGACCCACCATTTTTCC	188–226	Dow et al. 1995
QpZAG16	56	TC	CTTCACTGGCTTTTCCTCCT	131–189	Steinkellner et al. 1997
QpZAG16	56	TC	TGAAGCCCTTGTCAACATGC	131–189	Steinkellner et al. 1997
QrZAG7	56	AG	CAACTTGGTGTTCGGATCAA	108–154	Kampfer et al. 1998
QrZAG7	56	AG	GTGCATTTCTTTTATAGCATTCAC	108–154	Kampfer et al. 1998
QrZAG11	56	AG	CCTTGAACTCGAAGGTGTCCTT	241–283	Kampfer et al. 1998
QrZAG11	56	AG	GTAGGTCAAAACCATTGGTTGACT	241–283	Kampfer et al. 1998
QrZAG30	56	GA	TGCTCCGTCATAATCTTGCTCTGA	160–208	Kampfer et al. 1998
QrZAG30	56	GA	GCAATCCTATCATGCACATGCACAT	160–208	Kampfer et al. 1998
QrZAG87	56	TC	TCCCACCACTTTGGTCTCTCA	99–123	Kampfer et al. 1998
QrZAG87	56	TC	GTTGTC AGCAGTGGGATGGGTA	99–123	Kampfer et al. 1998
QrZAG96	56	AG	CCCAGTCACATCCACTACTGTCC	160–238	Kampfer et al. 1998
QrZAG96	56	AG	GGTTGGGAAAAGGAGATCAGA	160–238	Kampfer et al. 1998
PIE271	56	AG	CACACTCACCAACCCTACCC	197–247	Durand et al. 2010
PIE271	56	AG	GTGCGGTTGTAGACGGAGAT	197–247	Durand et al. 2010
QpZAG9	56	TG	GCAATTACAGGCTAGGCTGG	220–274	Steinkellner et al. 1997
QpZAG9	56	TG	GTCTGGACCTAGCCCTCATG	220–274	Steinkellner et al. 1997
QpZAG110	56	AG	GGAGGCTTCCTTCAACCTACT	193–267	Steinkellner et al. 1997
QpZAG110	56	AG	GATCTCTTGTGTGCTGTATTT	193–267	Steinkellner et al. 1997
QrZAG 112	56	GA	TTCTTGCTTTGGTGCGCG	98–116	Kampfer et al. 1998
QrZAG 112	56	GA	GTGGTCAGAG ACTCGGTAAGTATTC	98–116	Kampfer et al. 1998
QmC02241	56	GA/TC	TCAGTGACCACACGTCACCTCTC	169–211	Ueno et al. 2008
QmC02241	56	GA/TC	GTTTCTTGGCCATGTTTTGATGG	169–211	Ueno et al. 2008
CN725667	56	CCA/TTC	GCTAAGCTCCAAGCCATTTGTGA	194–272	Ueno and Tsumura 2008
CN725667	56	CCA/TTC	GTTTCCGATGACGTGGATGTAATCTCC	194–272	Ueno and Tsumura 2008
CR627959	56	GA/TGC	GCTCCCTGGTAGTCGGCTAAAGA	232–296	Ueno and Tsumura 2008
CR627959	56	GA/TGC	GTTTCAATTGGGACAACATGGAAGCAT	232–296	Ueno and Tsumura 2008
GOT011	56	GA	CCCCACCGTCTACTCTCAAA	197–225	Durand et al. 2010
GOT011	56	GA	GCGTTCACCACGTCCATAAT	197–225	Durand et al. 2010
GOT012	56	GT	TGATGATCCCAAACCACAAA	204–254	Durand et al. 2010
GOT012	56	GT	AAGGCTGCAGGACTTTTCAA	204–254	Durand et al. 2010
GOT021	56	AT	AGAAAGTTCCAGGGAAAGCA	110–150	Durand et al. 2010
GOT021	56	AT	CTTCGTCCCCAGTTGAATGT	110–150	Durand et al. 2010
GOT040	56	TC	AAGGCACTCGTCGCTTTCTA	242–298	Durand et al. 2010
GOT040	56	TC	ACCGATTTGAAGCTCGAGAA	242–298	Durand et al. 2010
PIE163	56	TC	GAGAGGCATGTGGAACCAAG	230–264	Durand et al. 2010
PIE163	56	TC	CAAGCATAGGTGGTGGAACC	230–264	Durand et al. 2010
FIR026	56	GT/GA	CTTCATGCACCAATTCCTCA	201–215	Durand et al. 2010
FIR026	56	GT/GA	GGCCATGTATGTGTGCAAAA	201–215	Durand et al. 2010
WAG066	56	TC	AACCTGTTTGGCTTCGTGTG	128–224	Durand et al. 2010
WAG066	56	TC	AACAAAAGATTGGGAGGTGC	128–224	Durand et al. 2010
WAG068	56	TC/TG	TCTGCAACAAAACCAAAACAC	154–210	Durand et al. 2010
WAG068	56	TC/TG	CGGAGGAGAGAGTCAGCAAC	154–210	Durand et al. 2010
POR017	56	GA	CCCATATCCCTCTACGAAAGAA	126–170	Durand et al. 2010
POR017	56	GA	CTGGAGATGACATAGTGTCTCAAA	126–170	Durand et al. 2010
POR025	56	AG	CACACAAACCCATATGATCTGAA	105–145	Durand et al. 2010
POR025	56	AG	TCTCTTTCGATCCCTTCTGC	105–145	Durand et al. 2010
FIR015	56	GT	ACCCTAAAACCCCAATCACC	112–148	Durand et al. 2010
FIR015	56	GT	CGGATCTTCGGCTATTCTTG	112–148	Durand et al. 2010

Back to article page

ISSN: 1297-966X

Contact us

Submission enquiries: annforsci@inrae.fr
General enquiries: info@biomedcentral.com